Build:
- 0
2026-09-20 05:49.01: New job: build hdf5.0.1.5 (d21edd44614a)
2026-09-20 05:49.01: Waiting for resource in pool day11-builds
2026-09-20 06:16.40: Got resource from pool day11-builds
2026-09-20 06:16.40: [profile full] build hdf5.0.1.5
2026-09-20 06:16.40: build hdf5.0.1.5 (d21edd44614a)
=== DEPENDENCIES (37 transitive) ===
base.v0.14.4 3211200038b1
base-threads.base ddcab511c589
base-unix.base 742554e1dbc2
cppo.1.8.0 a31615964db5
csexp.1.5.2 860cd5af4036
dune.3.24.2 6dfe5470779b
dune-configurator.3.22.2 ffcddb44c3bc
jane-street-headers.v0.14.0 c38a40abbdf5
jst-config.v0.14.1 f467ee63c329
ocaml.4.12.1 c1955d2a80c0
ocaml-base-compiler.4.12.1 508946109b41
ocaml-compiler-libs.v0.12.4 0c7de0714010
ocaml-config.2 1f050df2f239
ocaml-migrate-parsetree.1.8.0 80c48c349bae
ocaml-secondary-compiler.4.14.2 e2a22285b593
ocamlfind.1.9.6 d8e3ff7f66c6
ocamlfind-secondary.1.9.6 06f018ee18a5
octavius.1.2.2 813acaa8e38a
ppx_assert.v0.14.0 f9a55a976e49
ppx_base.v0.14.0 312286ed0603
ppx_cold.v0.14.0 affccc5bb497
ppx_compare.v0.14.0 7b8616a189ab
ppx_derivers.1.2.1 1fba1ff38ff5
ppx_enumerate.v0.14.0 40253c0d3910
ppx_hash.v0.14.0 939fa6837f81
ppx_here.v0.14.0 35644476f1b0
ppx_inline_test.v0.14.1 0ed25f9d22f2
ppx_js_style.v0.14.1 5fe79df04dc4
ppx_optcomp.v0.14.0 d798e1c72fe2
ppx_sexp_conv.v0.14.1 71411d843262
ppx_tools_versioned.5.4.0 10822533fa69
ppxlib.0.15.0 3b0d406eb625
result.1.5 8d9147902c9a
sexplib0.v0.14.0 4cd25bf157a0
stdio.v0.14.0 967c8287e841
stdlib-shims.0.3.0 f00cc083f9ce
time_now.v0.14.0 834d7b1100a5
=== STDOUT ===
Processing: [default: loading data]
The following system packages will first need to be installed:
libhdf5-dev
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "libhdf5-dev"
- E: Failed to fetch http://deb.debian.org/debian/pool/main/e/e2fsprogs/comerr-dev_2.1-1.47.2-3%2bb11_amd64.deb 404 Not Found [IP: 151.101.62.132 80]
- E: Failed to fetch http://deb.debian.org/debian/pool/main/libt/libtasn1-6/libtasn1-6-dev_4.20.0-2_amd64.deb 404 Not Found [IP: 151.101.62.132 80]
- E: Failed to fetch http://deb.debian.org/debian-security/pool/updates/main/o/openssl/libssl-dev_3.5.6-1%7edeb13u2_amd64.deb 404 Not Found [IP: 151.101.62.132 80]
- E: Failed to fetch http://deb.debian.org/debian/pool/main/c/curl/libcurl4-openssl-dev_8.14.1-2%2bdeb13u3_amd64.deb 404 Not Found [IP: 151.101.62.132 80]
- E: Failed to fetch http://deb.debian.org/debian/pool/main/libt/libtasn1-6/libtasn1-doc_4.20.0-2_all.deb 404 Not Found [IP: 151.101.62.132 80]
- E: Unable to fetch some archives, maybe run apt-get update or try with --fix-missing?
[ERROR] System package install failed with exit code 100 at command:
sudo apt-get install -qq -yy libhdf5-dev
[ERROR] These packages are still missing: libhdf5-dev
[NOTE] You can retry with '--assume-depexts' to skip this check, or run 'opam option depext=false' to permanently disable handling of system packages.
opam-build: depexts install failed; running apt-get update and retrying
The following system packages will first need to be installed:
libhdf5-dev
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "libhdf5-dev"
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- Setting up libhdf5-cpp-310:amd64 (1.14.5+repack-3) ...
- Setting up libgnutls28-dev:amd64 (3.8.9-3+deb13u4) ...
- Setting up libnghttp2-dev:amd64 (1.64.0-1.1+deb13u1) ...
- Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ...
- Setting up libkrb5-dev:amd64 (1.21.3-5+deb13u1) ...
- Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
- Setting up libhdf5-hl-cpp-310:amd64 (1.14.5+repack-3) ...
- Setting up libhdf5-hl-fortran-310:amd64 (1.14.5+repack-3) ...
- Setting up libcurl4-openssl-dev:amd64 (8.14.1-2+deb13u5) ...
- Setting up libhdf5-dev (1.14.5+repack-3) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
- Processing triggers for libc-bin (2.41-12+deb13u3) ...
[hdf5.0.1.5: dl]
[hdf5.0.1.5: extract]
-> retrieved hdf5.0.1.5 (https://opam.ocaml.org/cache)
[hdf5: dune build]
+ /home/opam/.opam/default/bin/dune "build" "-p" "hdf5" "-j" "39" (CWD=/home/opam/.opam/default/.opam-switch/build/hdf5.0.1.5)
- File "src/raw/dune", line 9, characters 2-11:
- 9 | h5i_stubs
- ^^^^^^^^^
- (cd _build/default/src/raw && /usr/bin/gcc -O2 -fno-strict-aliasing -fwrapv -fPIC -D_FILE_OFFSET_BITS=64 -D_REENTRANT -I/usr/include/hdf5/serial -g -I /home/opam/.opam/default/lib/ocaml -o h5i_stubs.o -c h5i_stubs.c)
- h5i_stubs.c: In function 'H5I_type_val':
- h5i_stubs.c:27:21: error: 'H5I_REFERENCE' undeclared (first use in this function); did you mean 'H5T_REFERENCE'?
- 27 | case 6: return H5I_REFERENCE;
- | ^~~~~~~~~~~~~
- | H5T_REFERENCE
- h5i_stubs.c:27:21: note: each undeclared identifier is reported only once for each function it appears in
- h5i_stubs.c: In function 'Val_h5i_type':
- h5i_stubs.c:51:10: error: 'H5I_REFERENCE' undeclared (first use in this function); did you mean 'H5T_REFERENCE'?
- 51 | case H5I_REFERENCE : return Val_int( 6);
- | ^~~~~~~~~~~~~
- | H5T_REFERENCE
[ERROR] The compilation of hdf5.0.1.5 failed at "dune build -p hdf5 -j 39".
build failed...
=== STDERR ===
2026-09-20 06:17.27: FAILED: build hdf5.0.1.5
2026-09-20 06:17.27: Job failed: build failed: hdf5.0.1.5