Build:
- 0
2026-08-06 02:09.50: New job: build hdf5.0.1.5 (eb5b3a6546d9)
2026-08-06 02:09.50: Waiting for resource in pool day11-builds
2026-08-06 02:23.53: Got resource from pool day11-builds
2026-08-06 02:23.53: [profile full] build hdf5.0.1.5
2026-08-06 02:23.53: build hdf5.0.1.5 (eb5b3a6546d9)
=== DEPENDENCIES (37 transitive) ===
base.v0.14.4 eb55769599d4
base-threads.base 4e0218232a65
base-unix.base 2d2c0bf34146
cppo.1.8.0 d4d22a078b61
csexp.1.5.2 7b59a740d19c
dune.3.24.2 3c62ec9db62a
dune-configurator.3.22.2 40eff4242369
jane-street-headers.v0.14.0 50cc5b9f5b23
jst-config.v0.14.1 f2eacecedab7
ocaml.4.12.1 9ea8a0b5f1ea
ocaml-base-compiler.4.12.1 253c210e6b00
ocaml-compiler-libs.v0.12.4 cf2e6c507eb3
ocaml-config.2 5bc8fb6424c9
ocaml-migrate-parsetree.1.8.0 d455701de658
ocaml-secondary-compiler.4.14.2 cf006402d8f7
ocamlfind.1.9.6 6c3ed7d7e9da
ocamlfind-secondary.1.9.6 b96631e6c3bc
octavius.1.2.2 32d594fe2b8e
ppx_assert.v0.14.0 81ef9030d535
ppx_base.v0.14.0 0b2fdf70ec1d
ppx_cold.v0.14.0 7915feeaadee
ppx_compare.v0.14.0 8b143c26d02d
ppx_derivers.1.2.1 98fe3c91257a
ppx_enumerate.v0.14.0 f4475f73122c
ppx_hash.v0.14.0 4a334c22b940
ppx_here.v0.14.0 95b4f165ccfb
ppx_inline_test.v0.14.1 a70102bbd811
ppx_js_style.v0.14.1 2f1ac806f1aa
ppx_optcomp.v0.14.0 1bf46b2f29f2
ppx_sexp_conv.v0.14.1 6a864dbf9c55
ppx_tools_versioned.5.4.0 413140dbe3fe
ppxlib.0.15.0 ee450a4e4ef6
result.1.5 c6013ee7f4e7
sexplib0.v0.14.0 14ea8fb39234
stdio.v0.14.0 7b570da6dbbe
stdlib-shims.0.3.0 4ee6847fad50
time_now.v0.14.0 99d98cdc9de5
=== STDOUT ===
Processing: [default: loading data]
The following system packages will first need to be installed:
libhdf5-dev
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "libhdf5-dev"
- E: Failed to fetch http://deb.debian.org/debian/pool/main/libt/libtasn1-6/libtasn1-6-dev_4.20.0-2_amd64.deb 404 Not Found [IP: 151.101.62.132 80]
- E: Failed to fetch http://deb.debian.org/debian/pool/main/c/curl/libcurl4-openssl-dev_8.14.1-2%2bdeb13u3_amd64.deb 404 Not Found [IP: 151.101.62.132 80]
- E: Failed to fetch http://deb.debian.org/debian/pool/main/libt/libtasn1-6/libtasn1-doc_4.20.0-2_all.deb 404 Not Found [IP: 151.101.62.132 80]
- E: Unable to fetch some archives, maybe run apt-get update or try with --fix-missing?
[ERROR] System package install failed with exit code 100 at command:
sudo apt-get install -qq -yy libhdf5-dev
[ERROR] These packages are still missing: libhdf5-dev
[NOTE] You can retry with '--assume-depexts' to skip this check, or run 'opam option depext=false' to permanently disable handling of system packages.
opam-build: depexts install failed; running apt-get update and retrying
The following system packages will first need to be installed:
libhdf5-dev
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "libhdf5-dev"
- Selecting previously unselected package comerr-dev:amd64.
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(Reading database ... 20108 files and directories currently installed.)
- Preparing to unpack .../00-comerr-dev_2.1-1.47.2-3+b11_amd64.deb ...
- Unpacking comerr-dev:amd64 (2.1-1.47.2-3+b11) ...
- Preparing to unpack .../01-curl_8.14.1-2+deb13u4_amd64.deb ...
- Unpacking curl (8.14.1-2+deb13u4) over (8.14.1-2+deb13u3) ...
- Preparing to unpack .../02-libcurl4t64_8.14.1-2+deb13u4_amd64.deb ...
- Unpacking libcurl4t64:amd64 (8.14.1-2+deb13u4) over (8.14.1-2+deb13u3) ...
- Selecting previously unselected package hdf5-helpers.
- Preparing to unpack .../03-hdf5-helpers_1.14.5+repack-3_amd64.deb ...
- Unpacking hdf5-helpers (1.14.5+repack-3) ...
- Selecting previously unselected package libgssrpc4t64:amd64.
- Preparing to unpack .../04-libgssrpc4t64_1.21.3-5+deb13u1_amd64.deb ...
- Unpacking libgssrpc4t64:amd64 (1.21.3-5+deb13u1) ...
- Selecting previously unselected package libkadm5clnt-mit12:amd64.
- Preparing to unpack .../05-libkadm5clnt-mit12_1.21.3-5+deb13u1_amd64.deb ...
- Unpacking libkadm5clnt-mit12:amd64 (1.21.3-5+deb13u1) ...
- Selecting previously unselected package libkdb5-10t64:amd64.
- Preparing to unpack .../06-libkdb5-10t64_1.21.3-5+deb13u1_amd64.deb ...
- Unpacking libkdb5-10t64:amd64 (1.21.3-5+deb13u1) ...
- Selecting previously unselected package libkadm5srv-mit12:amd64.
- Preparing to unpack .../07-libkadm5srv-mit12_1.21.3-5+deb13u1_amd64.deb ...
- Unpacking libkadm5srv-mit12:amd64 (1.21.3-5+deb13u1) ...
- Selecting previously unselected package krb5-multidev:amd64.
- Preparing to unpack .../08-krb5-multidev_1.21.3-5+deb13u1_amd64.deb ...
- Unpacking krb5-multidev:amd64 (1.21.3-5+deb13u1) ...
- Selecting previously unselected package libaec0:amd64.
- Preparing to unpack .../09-libaec0_1.1.3-1+b1_amd64.deb ...
- Unpacking libaec0:amd64 (1.1.3-1+b1) ...
- Selecting previously unselected package libsz2:amd64.
- Preparing to unpack .../10-libsz2_1.1.3-1+b1_amd64.deb ...
- Unpacking libsz2:amd64 (1.1.3-1+b1) ...
- Selecting previously unselected package libaec-dev:amd64.
- Preparing to unpack .../11-libaec-dev_1.1.3-1+b1_amd64.deb ...
- Unpacking libaec-dev:amd64 (1.1.3-1+b1) ...
- Selecting previously unselected package libbrotli-dev:amd64.
- Preparing to unpack .../12-libbrotli-dev_1.1.0-2+b7_amd64.deb ...
- Unpacking libbrotli-dev:amd64 (1.1.0-2+b7) ...
- Preparing to unpack .../13-libcurl3t64-gnutls_8.14.1-2+deb13u4_amd64.deb ...
- Unpacking libcurl3t64-gnutls:amd64 (8.14.1-2+deb13u4) over (8.14.1-2+deb13u3) ...
- Selecting previously unselected package libidn2-dev:amd64.
- Preparing to unpack .../14-libidn2-dev_2.3.8-2_amd64.deb ...
- Unpacking libidn2-dev:amd64 (2.3.8-2) ...
- Selecting previously unselected package libkrb5-dev:amd64.
- Preparing to unpack .../15-libkrb5-dev_1.21.3-5+deb13u1_amd64.deb ...
- Unpacking libkrb5-dev:amd64 (1.21.3-5+deb13u1) ...
- Selecting previously unselected package libldap-dev:amd64.
- Preparing to unpack .../16-libldap-dev_2.6.10+dfsg-1_amd64.deb ...
- Unpacking libldap-dev:amd64 (2.6.10+dfsg-1) ...
- Selecting previously unselected package libpkgconf3:amd64.
- Preparing to unpack .../17-libpkgconf3_1.8.1-4_amd64.deb ...
- Unpacking libpkgconf3:amd64 (1.8.1-4) ...
- Selecting previously unselected package pkgconf-bin.
- Preparing to unpack .../18-pkgconf-bin_1.8.1-4_amd64.deb ...
- Unpacking pkgconf-bin (1.8.1-4) ...
- Selecting previously unselected package pkgconf:amd64.
- Preparing to unpack .../19-pkgconf_1.8.1-4_amd64.deb ...
- Unpacking pkgconf:amd64 (1.8.1-4) ...
- Selecting previously unselected package libnghttp2-dev:amd64.
- Preparing to unpack .../20-libnghttp2-dev_1.64.0-1.1+deb13u1_amd64.deb ...
- Unpacking libnghttp2-dev:amd64 (1.64.0-1.1+deb13u1) ...
- Selecting previously unselected package libnghttp3-dev:amd64.
- Preparing to unpack .../21-libnghttp3-dev_1.8.0-1_amd64.deb ...
- Unpacking libnghttp3-dev:amd64 (1.8.0-1) ...
- Selecting previously unselected package libpsl-dev:amd64.
- Preparing to unpack .../22-libpsl-dev_0.21.2-1.1+b1_amd64.deb ...
- Unpacking libpsl-dev:amd64 (0.21.2-1.1+b1) ...
- Selecting previously unselected package libgmpxx4ldbl:amd64.
- Preparing to unpack .../23-libgmpxx4ldbl_2%3a6.3.0+dfsg-3_amd64.deb ...
- Unpacking libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-3) ...
- Selecting previously unselected package libgmp-dev:amd64.
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- Unpacking libgmp-dev:amd64 (2:6.3.0+dfsg-3) ...
- Selecting previously unselected package libevent-2.1-7t64:amd64.
- Preparing to unpack .../25-libevent-2.1-7t64_2.1.12-stable-10+b1_amd64.deb ...
- Unpacking libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ...
- Selecting previously unselected package libunbound8:amd64.
- Preparing to unpack .../26-libunbound8_1.22.0-2+deb13u3_amd64.deb ...
- Unpacking libunbound8:amd64 (1.22.0-2+deb13u3) ...
- Selecting previously unselected package libgnutls-dane0t64:amd64.
- Preparing to unpack .../27-libgnutls-dane0t64_3.8.9-3+deb13u4_amd64.deb ...
- Unpacking libgnutls-dane0t64:amd64 (3.8.9-3+deb13u4) ...
- Selecting previously unselected package libgnutls-openssl27t64:amd64.
- Preparing to unpack .../28-libgnutls-openssl27t64_3.8.9-3+deb13u4_amd64.deb ...
- Unpacking libgnutls-openssl27t64:amd64 (3.8.9-3+deb13u4) ...
- Selecting previously unselected package libp11-kit-dev:amd64.
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- Unpacking libp11-kit-dev:amd64 (0.25.5-3) ...
- Preparing to unpack .../30-libtasn1-6_4.20.0-2+deb13u1_amd64.deb ...
- Unpacking libtasn1-6:amd64 (4.20.0-2+deb13u1) over (4.20.0-2) ...
- Selecting previously unselected package libtasn1-6-dev:amd64.
- Preparing to unpack .../31-libtasn1-6-dev_4.20.0-2+deb13u1_amd64.deb ...
- Unpacking libtasn1-6-dev:amd64 (4.20.0-2+deb13u1) ...
- Selecting previously unselected package nettle-dev:amd64.
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- Unpacking nettle-dev:amd64 (3.10.1-1) ...
- Selecting previously unselected package libgnutls28-dev:amd64.
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- Unpacking libgnutls28-dev:amd64 (3.8.9-3+deb13u4) ...
- Selecting previously unselected package zlib1g-dev:amd64.
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- Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ...
- Selecting previously unselected package librtmp-dev:amd64.
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- Unpacking librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
- Selecting previously unselected package libssl-dev:amd64.
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- Unpacking libssl-dev:amd64 (3.5.6-1~deb13u2) ...
- Selecting previously unselected package libssh2-1-dev:amd64.
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- Unpacking libssh2-1-dev:amd64 (1.11.1-1+deb13u1) ...
- Selecting previously unselected package libzstd-dev:amd64.
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- Unpacking libzstd-dev:amd64 (1.5.7+dfsg-1) ...
- Selecting previously unselected package libcurl4-openssl-dev:amd64.
- Preparing to unpack .../39-libcurl4-openssl-dev_8.14.1-2+deb13u4_amd64.deb ...
- Unpacking libcurl4-openssl-dev:amd64 (8.14.1-2+deb13u4) ...
- Selecting previously unselected package libgfortran5:amd64.
- Preparing to unpack .../40-libgfortran5_14.2.0-19_amd64.deb ...
- Unpacking libgfortran5:amd64 (14.2.0-19) ...
- Selecting previously unselected package libhdf5-310:amd64.
- Preparing to unpack .../41-libhdf5-310_1.14.5+repack-3_amd64.deb ...
- Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ...
- Selecting previously unselected package libhdf5-cpp-310:amd64.
- Preparing to unpack .../42-libhdf5-cpp-310_1.14.5+repack-3_amd64.deb ...
- Unpacking libhdf5-cpp-310:amd64 (1.14.5+repack-3) ...
- Selecting previously unselected package libhdf5-fortran-310:amd64.
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- Unpacking libhdf5-fortran-310:amd64 (1.14.5+repack-3) ...
- Selecting previously unselected package libhdf5-hl-310:amd64.
- Preparing to unpack .../44-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ...
- Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ...
- Selecting previously unselected package libhdf5-hl-fortran-310:amd64.
- Preparing to unpack .../45-libhdf5-hl-fortran-310_1.14.5+repack-3_amd64.deb ...
- Unpacking libhdf5-hl-fortran-310:amd64 (1.14.5+repack-3) ...
- Selecting previously unselected package libhdf5-hl-cpp-310:amd64.
- Preparing to unpack .../46-libhdf5-hl-cpp-310_1.14.5+repack-3_amd64.deb ...
- Unpacking libhdf5-hl-cpp-310:amd64 (1.14.5+repack-3) ...
- Selecting previously unselected package libjpeg62-turbo:amd64.
- Preparing to unpack .../47-libjpeg62-turbo_1%3a2.1.5-4_amd64.deb ...
- Unpacking libjpeg62-turbo:amd64 (1:2.1.5-4) ...
- Selecting previously unselected package libjpeg62-turbo-dev:amd64.
- Preparing to unpack .../48-libjpeg62-turbo-dev_1%3a2.1.5-4_amd64.deb ...
- Unpacking libjpeg62-turbo-dev:amd64 (1:2.1.5-4) ...
- Selecting previously unselected package libjpeg-dev:amd64.
- Preparing to unpack .../49-libjpeg-dev_1%3a2.1.5-4_amd64.deb ...
- Unpacking libjpeg-dev:amd64 (1:2.1.5-4) ...
- Selecting previously unselected package libhdf5-dev.
- Preparing to unpack .../50-libhdf5-dev_1.14.5+repack-3_amd64.deb ...
- Unpacking libhdf5-dev (1.14.5+repack-3) ...
- Selecting previously unselected package libtasn1-doc.
- Preparing to unpack .../51-libtasn1-doc_4.20.0-2+deb13u1_all.deb ...
- Unpacking libtasn1-doc (4.20.0-2+deb13u1) ...
- Setting up libgnutls-openssl27t64:amd64 (3.8.9-3+deb13u4) ...
- Setting up libzstd-dev:amd64 (1.5.7+dfsg-1) ...
- Setting up hdf5-helpers (1.14.5+repack-3) ...
- Setting up libcurl4t64:amd64 (8.14.1-2+deb13u4) ...
- Setting up libtasn1-doc (4.20.0-2+deb13u1) ...
- Setting up libcurl3t64-gnutls:amd64 (8.14.1-2+deb13u4) ...
- Setting up libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ...
- Setting up libaec0:amd64 (1.1.3-1+b1) ...
- Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ...
- Setting up libunbound8:amd64 (1.22.0-2+deb13u3) ...
- Setting up libpkgconf3:amd64 (1.8.1-4) ...
- Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-3) ...
- Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ...
- Setting up libgnutls-dane0t64:amd64 (3.8.9-3+deb13u4) ...
- Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-4) ...
- Setting up libgssrpc4t64:amd64 (1.21.3-5+deb13u1) ...
- Setting up libldap-dev:amd64 (2.6.10+dfsg-1) ...
- Setting up comerr-dev:amd64 (2.1-1.47.2-3+b11) ...
- Setting up libssl-dev:amd64 (3.5.6-1~deb13u2) ...
- Setting up pkgconf-bin (1.8.1-4) ...
- Setting up libidn2-dev:amd64 (2.3.8-2) ...
- Setting up libgfortran5:amd64 (14.2.0-19) ...
- Setting up libnghttp3-dev:amd64 (1.8.0-1) ...
- Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ...
- Setting up libtasn1-6:amd64 (4.20.0-2+deb13u1) ...
- Setting up curl (8.14.1-2+deb13u4) ...
- Setting up libtasn1-6-dev:amd64 (4.20.0-2+deb13u1) ...
- Setting up libbrotli-dev:amd64 (1.1.0-2+b7) ...
- Setting up libp11-kit-dev:amd64 (0.25.5-3) ...
- Setting up libsz2:amd64 (1.1.3-1+b1) ...
- Setting up libkadm5clnt-mit12:amd64 (1.21.3-5+deb13u1) ...
- Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-3) ...
- Setting up nettle-dev:amd64 (3.10.1-1) ...
- Setting up libkdb5-10t64:amd64 (1.21.3-5+deb13u1) ...
- Setting up libaec-dev:amd64 (1.1.3-1+b1) ...
- Setting up libjpeg-dev:amd64 (1:2.1.5-4) ...
- Setting up pkgconf:amd64 (1.8.1-4) ...
- Setting up libssh2-1-dev:amd64 (1.11.1-1+deb13u1) ...
- Setting up libhdf5-310:amd64 (1.14.5+repack-3) ...
- Setting up libkadm5srv-mit12:amd64 (1.21.3-5+deb13u1) ...
- Setting up libhdf5-fortran-310:amd64 (1.14.5+repack-3) ...
- Setting up krb5-multidev:amd64 (1.21.3-5+deb13u1) ...
- Setting up libhdf5-cpp-310:amd64 (1.14.5+repack-3) ...
- Setting up libgnutls28-dev:amd64 (3.8.9-3+deb13u4) ...
- Setting up libnghttp2-dev:amd64 (1.64.0-1.1+deb13u1) ...
- Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ...
- Setting up libkrb5-dev:amd64 (1.21.3-5+deb13u1) ...
- Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
- Setting up libhdf5-hl-cpp-310:amd64 (1.14.5+repack-3) ...
- Setting up libhdf5-hl-fortran-310:amd64 (1.14.5+repack-3) ...
- Setting up libcurl4-openssl-dev:amd64 (8.14.1-2+deb13u4) ...
- Setting up libhdf5-dev (1.14.5+repack-3) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
- Processing triggers for libc-bin (2.41-12+deb13u3) ...
[hdf5.0.1.5: dl]
[hdf5.0.1.5: extract]
-> retrieved hdf5.0.1.5 (https://opam.ocaml.org/cache)
[hdf5: dune build]
+ /home/opam/.opam/default/bin/dune "build" "-p" "hdf5" "-j" "39" (CWD=/home/opam/.opam/default/.opam-switch/build/hdf5.0.1.5)
- File "src/raw/dune", line 9, characters 2-11:
- 9 | h5i_stubs
- ^^^^^^^^^
- (cd _build/default/src/raw && /usr/bin/gcc -O2 -fno-strict-aliasing -fwrapv -fPIC -D_FILE_OFFSET_BITS=64 -D_REENTRANT -I/usr/include/hdf5/serial -g -I /home/opam/.opam/default/lib/ocaml -o h5i_stubs.o -c h5i_stubs.c)
- h5i_stubs.c: In function 'H5I_type_val':
- h5i_stubs.c:27:21: error: 'H5I_REFERENCE' undeclared (first use in this function); did you mean 'H5T_REFERENCE'?
- 27 | case 6: return H5I_REFERENCE;
- | ^~~~~~~~~~~~~
- | H5T_REFERENCE
- h5i_stubs.c:27:21: note: each undeclared identifier is reported only once for each function it appears in
- h5i_stubs.c: In function 'Val_h5i_type':
- h5i_stubs.c:51:10: error: 'H5I_REFERENCE' undeclared (first use in this function); did you mean 'H5T_REFERENCE'?
- 51 | case H5I_REFERENCE : return Val_int( 6);
- | ^~~~~~~~~~~~~
- | H5T_REFERENCE
[ERROR] The compilation of hdf5.0.1.5 failed at "dune build -p hdf5 -j 39".
build failed...
=== STDERR ===
2026-08-06 02:25.19: FAILED: build hdf5.0.1.5
2026-08-06 02:25.19: Job failed: build failed: hdf5.0.1.5