Build:
- 0
2026-06-24 16:52.15: New job: build lbvs_consent.2.2.0 (f33045799113)
2026-06-24 16:52.15: Waiting for resource in pool day11-builds
2026-06-24 17:39.35: Got resource from pool day11-builds
2026-06-24 17:39.35: [profile full] build lbvs_consent.2.2.0
2026-06-24 17:39.35: build lbvs_consent.2.2.0 (f33045799113)
=== DEPENDENCIES (42 transitive) ===
base-bigarray.base 2e16f77d4cae
base-bytes.base 4691f51dd9fd
base-threads.base c9e7bdbf5823
base-unix.base 7d1428be9ddb
batteries.3.10.0 4588a8f55d48
bitv.2.1 d313c58771bd
camlp-streams.5.0.1 d48629cb1d21
camlzip.1.14 357b93dd2eec
conf-autoconf.0.2 676e4452dc37
conf-boost.1 00039ec33118
conf-openbabel.0.1 1ad0df739c45
conf-pkg-config.5 d5de2c6a88f9
conf-python-3.9.0.0 6d72fcfa5947
conf-rdkit.1 86320d042a70
conf-zlib.1 5297f1b9477f
cpm.12.2.0 b889c519e886
cpu.2.0.0 0aabba9bb8b5
csexp.1.5.2 daa725d901fe
dokeysto.4.0.2 8ee1a3f34d22
dolog.6.0.0 89bd50919581
dune.3.23.1 dc7ac21ea3be
dune-configurator.3.23.1 e27f781e405b
extunix.0.4.4 559eecc81341
minicli.5.0.2 168e00c0425a
num.1.6 3d665f14515a
ocaml.5.4.1 71fed6f83b21
ocaml-base-compiler.5.4.1 4b8cbe74bda9
ocaml-compiler.5.4.1 df07189447bd
ocaml-compiler-libs.v0.17.0 16db8c1cf256
ocaml-config.3 e4a06a221f09
ocamlfind.1.9.8 567e34ecf540
ounit2.2.2.7 686b329563fb
parany.14.0.1 d4e6219a85ba
ppx_derivers.1.2.1 9db920257470
ppxlib.0.38.0 778175ab9125
qcheck.0.91 fb913999f1ad
qcheck-core.0.91 e5b75dfe067e
qcheck-ounit.0.91 11b3c3da535a
seq.base cf386be98197
sexplib0.v0.17.0 bc4140a6824d
stdlib-shims.0.3.0 d3f2d28ed00d
vpt.5.0.0 1aba9d01c419
=== STDOUT ===
Processing: [default: loading data]
[lbvs_consent.2.2.0: dl]
[lbvs_consent.2.2.0: extract]
[lbvs_consent.2.2.0/makefile.patch: dl]
-> retrieved lbvs_consent.2.2.0 (https://opam.ocaml.org/cache)
[lbvs_consent: patch] applying makefile.patch
[lbvs_consent: make obmaccs]
+ /usr/bin/make "obmaccs" (CWD=/home/opam/.opam/default/.opam-switch/build/lbvs_consent.2.2.0)
- cd src; make
- make[1]: Entering directory '/home/opam/.opam/default/.opam-switch/build/lbvs_consent.2.2.0/src'
- c++ -W -Wall `pkg-config --silence-errors --cflags openbabel-2.0 || pkg-config --cflags openbabel-3` ob_maccs.cpp \
- -o lbvs_consent_ob_maccs `pkg-config --silence-errors --libs openbabel-2.0 || pkg-config --libs openbabel-3` -Wl,-R/usr/lib
- In file included from /usr/include/openbabel3/openbabel/fingerprint.h:28,
- from ob_maccs.cpp:1:
- /usr/include/openbabel3/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
- 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
- | ^~~~~~~~~~~~~~~
- In file included from /usr/include/c++/12/bits/stl_tree.h:65,
- from /usr/include/c++/12/map:60,
- from /usr/include/openbabel3/openbabel/fingerprint.h:23:
- /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
- 131 | struct binary_function
- | ^~~~~~~~~~~~~~~
- In file included from /usr/include/openbabel3/openbabel/mol.h:48,
- from ob_maccs.cpp:2:
- /usr/include/openbabel3/openbabel/base.h: In member function 'virtual const char* OpenBabel::OBBase::GetTitle(bool) const':
- /usr/include/openbabel3/openbabel/base.h:286:49: warning: unused parameter 'replaceNewlines' [-Wunused-parameter]
- 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";}
- | ^
- /usr/include/openbabel3/openbabel/base.h:37:20: note: in definition of macro 'UNUSED'
- 37 | # define UNUSED(x) x
- | ^
- make[1]: Leaving directory '/home/opam/.opam/default/.opam-switch/build/lbvs_consent.2.2.0/src'
[lbvs_consent: dune build]
+ /home/opam/.opam/default/bin/dune "build" "-p" "lbvs_consent" "-j" "39" (CWD=/home/opam/.opam/default/.opam-switch/build/lbvs_consent.2.2.0)
-> compiled lbvs_consent.2.2.0
[lbvs_consent: cp]
+ /usr/bin/cp "bin/lbvs_consent_ecfp4.py" "/home/opam/.opam/default/bin/lbvs_consent_ecfp4.py" (CWD=/home/opam/.opam/default/.opam-switch/build/lbvs_consent.2.2.0)
[lbvs_consent: cp]
+ /usr/bin/cp "src/lbvs_consent_ob_maccs" "/home/opam/.opam/default/bin/lbvs_consent_ob_maccs" (CWD=/home/opam/.opam/default/.opam-switch/build/lbvs_consent.2.2.0)
-> installed lbvs_consent.2.2.0
[WARNING] Opam packages conf-autoconf.0.2, conf-boost.1, conf-openbabel.0.1, conf-python-3.9.0.0, conf-rdkit.1 and conf-zlib.1 depend on the following system packages that are no longer installed: autoconf libboost-dev libopenbabel-dev librdkit-dev python3 python3-rdkit zlib1g-dev
- conf-autoconf.0.2: depends on autoconf
- conf-boost.1: depends on libboost-dev
- conf-openbabel.0.1: depends on libopenbabel-dev
- conf-python-3.9.0.0: depends on python3
- conf-rdkit.1: depends on librdkit-dev, python3-rdkit
- conf-zlib.1: depends on zlib1g-dev
=== STDERR ===
2026-06-24 17:40.11: OK: build lbvs_consent.2.2.0 (runc: 9.6s, disk: 14KB)
2026-06-24 17:40.11: Job succeeded