Build:
- 0
2026-06-24 13:54.51: New job: build acpc.1.2.3 (0e0068f9eb64) 2026-06-24 13:54.51: Waiting for resource in pool day11-builds 2026-06-24 16:01.40: Got resource from pool day11-builds 2026-06-24 16:01.40: [profile full] build acpc.1.2.3 2026-06-24 16:01.40: build acpc.1.2.3 (0e0068f9eb64) === DEPENDENCIES (23 transitive) === base-bigarray.base 2e16f77d4cae base-threads.base c9e7bdbf5823 base-unix.base 7d1428be9ddb batteries.3.6.0 44fb95af4a28 camlp-streams.5.0.1 28f363162dde conf-autoconf.0.2 676e4452dc37 conf-gnuplot.0.1 9c22f9d2dd5d csexp.1.5.2 610c78f17734 dolog.3.0 a7fc771d3d6d dune.3.23.1 848a72441e15 dune-configurator.3.23.1 bc97ce98d8a9 fileutils.0.6.6 0f84dbe61300 itv-tree.2.2 8fc990790f94 num.1.6 110cee7a7e2e obuild.0.2.2 797d55b0b90e ocaml.4.14.4 b047fb9251f4 ocaml-base-compiler.4.14.4 d3b7ccb2c6fb ocaml-config.2 2d9c209f5590 ocamlbuild.0.16.1 7e0d6aadb209 ocamlfind.1.9.8 214dd418ac02 ocamlgraph.2.2.0 9a3a86466508 parmap.1.2.5 d90fd02d799c vector3.1.0.0 2fb327be3dca === STDOUT === Processing: [default: loading data] [acpc.1.2.3: dl] [acpc.1.2.3: extract] -> retrieved acpc.1.2.3 (https://opam.ocaml.org/cache) [acpc: obuild configure] + /home/opam/.opam/default/bin/obuild "configure" (CWD=/home/opam/.opam/default/.opam-switch/build/acpc.1.2.3) - Configuring ACPC-1.2... - Detected 4 CPU cores, setting default parallelism to 4 [acpc: obuild build] + /home/opam/.opam/default/bin/obuild "build" (CWD=/home/opam/.opam/default/.opam-switch/build/acpc.1.2.3) - warning: source file 'common/pqr_parser.ml' is compiled for both 'lib-common' (as Pqr_parser) and 'exe-acpc_par' (as Common.Pqr_parser). - These targets use different -for-pack flags, which may cause build failures. - warning: source file 'common/ROC.ml' is compiled for both 'lib-common' (as ROC) and 'exe-acpc_par' (as Common.ROC). - These targets use different -for-pack flags, which may cause build failures. - warning: source file 'common/autocorr.ml' is compiled for both 'lib-common' (as Autocorr) and 'exe-acpc_par' (as Common.Autocorr). - These targets use different -for-pack flags, which may cause build failures. - warning: source file 'common/mol2_parser.ml' is compiled for both 'lib-common' (as Mol2_parser) and 'exe-acpc_par' (as Common.Mol2_parser). - These targets use different -for-pack flags, which may cause build failures. - warning: source file 'common/feature.ml' is compiled for both 'lib-common' (as Feature) and 'exe-acpc_par' (as Common.Feature). - These targets use different -for-pack flags, which may cause build failures. - warning: source file 'common/chimera_colors.ml' is compiled for both 'lib-common' (as Chimera_colors) and 'exe-acpc_par' (as Common.Chimera_colors). - These targets use different -for-pack flags, which may cause build failures. - warning: source file 'common/consensus.ml' is compiled for both 'lib-common' (as Consensus) and 'exe-acpc_par' (as Common.Consensus). - These targets use different -for-pack flags, which may cause build failures. - warning: source file 'common/pl_parser.ml' is compiled for both 'lib-common' (as Pl_parser) and 'exe-acpc_par' (as Common.Pl_parser). - These targets use different -for-pack flags, which may cause build failures. - warning: source file 'common/my_utils.ml' is compiled for both 'lib-common' (as My_utils) and 'exe-acpc_par' (as Common.My_utils). - These targets use different -for-pack flags, which may cause build failures. - warning: source file 'common/amino_acid.ml' is compiled for both 'lib-common' (as Amino_acid) and 'exe-acpc_par' (as Common.Amino_acid). - These targets use different -for-pack flags, which may cause build failures. - warning: source file 'common/molecule.ml' is compiled for both 'lib-common' (as Molecule) and 'exe-acpc_par' (as Common.Molecule). - These targets use different -for-pack flags, which may cause build failures. - warning: source file 'common/molecular_graph.ml' is compiled for both 'lib-common' (as Molecular_graph) and 'exe-acpc_par' (as Common.Molecular_graph). - These targets use different -for-pack flags, which may cause build failures. - warning: source file 'common/query.ml' is compiled for both 'lib-common' (as Query) and 'exe-acpc_par' (as Common.Query). - These targets use different -for-pack flags, which may cause build failures. - warning: source file 'common/atom.ml' is compiled for both 'lib-common' (as Atom) and 'exe-acpc_par' (as Common.Atom). - These targets use different -for-pack flags, which may cause build failures. - [ 1 of 69] Compiling My_utils - [ 2 of 69] Compiling Feature - [ 3 of 69] Compiling Chimera_colors - [ 4 of 69] Compiling Amino_acid - File "common/my_utils.ml", line 149, characters 4-18: - 149 | Pervasives.min (* a fun *) - ^^^^^^^^^^^^^^ - Alert deprecated: module Stdlib.Pervasives - Use Stdlib instead. - - If you need to stay compatible with OCaml < 4.07, you can use the - stdlib-shims library: https://github.com/ocaml/stdlib-shims - File "common/my_utils.ml", line 150, characters 4-23: - 150 | Pervasives.infinity (* a value *) - ^^^^^^^^^^^^^^^^^^^ - Alert deprecated: module Stdlib.Pervasives - Use Stdlib instead. - - If you need to stay compatible with OCaml < 4.07, you can use the - stdlib-shims library: https://github.com/ocaml/stdlib-shims - File "common/my_utils.ml", line 156, characters 4-18: - 156 | Pervasives.max (* a fun *) - ^^^^^^^^^^^^^^ - Alert deprecated: module Stdlib.Pervasives - Use Stdlib instead. - - If you need to stay compatible with OCaml < 4.07, you can use the - stdlib-shims library: https://github.com/ocaml/stdlib-shims - File "common/my_utils.ml", line 157, characters 4-27: - 157 | Pervasives.neg_infinity (* a value *) - ^^^^^^^^^^^^^^^^^^^^^^^ - Alert deprecated: module Stdlib.Pervasives - Use Stdlib instead. - - If you need to stay compatible with OCaml < 4.07, you can use the - stdlib-shims library: https://github.com/ocaml/stdlib-shims - File "common/my_utils.ml", line 610, characters 34-52: - 610 | A.fast_sort (fun (a,_) (b,_) -> Pervasives.compare a b) arr; - ^^^^^^^^^^^^^^^^^^ - Alert deprecated: module Stdlib.Pervasives - Use Stdlib instead. - - If you need to stay compatible with OCaml < 4.07, you can use the - stdlib-shims library: https://github.com/ocaml/stdlib-shims - File "common/my_utils.ml", line 630, characters 44-62: - 630 | let ans = L.fast_sort (fun (_,a) (_,b) -> Pervasives.compare a b) ans in - ^^^^^^^^^^^^^^^^^^ - Alert deprecated: module Stdlib.Pervasives - Use Stdlib instead. - - If you need to stay compatible with OCaml < 4.07, you can use the - stdlib-shims library: https://github.com/ocaml/stdlib-shims - - [ 5 of 69] Compiling ROC - [ 6 of 69] Compiling Atom - [ 7 of 69] Compiling Consensus - [ 8 of 69] Compiling Molecule - [ 9 of 69] Compiling Pqr_parser - [10 of 69] Compiling Mol2_parser - [11 of 69] Compiling Pl_parser - [12 of 69] Compiling Molecular_graph - [13 of 69] Compiling Autocorr - File "common/molecular_graph.ml", line 17, characters 18-36: - 17 | let compare = Pervasives.compare - ^^^^^^^^^^^^^^^^^^ - Alert deprecated: module Stdlib.Pervasives - Use Stdlib instead. - - If you need to stay compatible with OCaml < 4.07, you can use the - stdlib-shims library: https://github.com/ocaml/stdlib-shims - - [14 of 69] Compiling Query - [15 of 69] Linking library dist/build/lib-common/common.cmxa - [15 of 69] Linking library dist/build/lib-common/common.cmxs - [15 of 69] Linking library dist/build/lib-common/common.cma - [16 of 69] Checking dist/build/lib-common - [17 of 69] Compiling Cacpc - [18 of 69] Compiling Common.Parmap_utils - [19 of 69] Compiling Common.Amino_acid - [20 of 69] Compiling Common.My_utils - [21 of 69] Compiling Common.Feature - [22 of 69] Compiling Common.Chimera_colors - [23 of 69] Compiling Cons_rank - File "cons_rank.ml", line 52, characters 18-26: - 52 | let lines = S.nsplit !rank_files ~by:"," in - ^^^^^^^^ - Alert deprecated: S.nsplit - Use split_on_string instead. - - [24 of 69] Compiling Scores - [25 of 69] Compiling Er_tool - [26 of 69] Compiling Auc_tool - File "common/my_utils.ml", line 149, characters 4-18: - 149 | Pervasives.min (* a fun *) - ^^^^^^^^^^^^^^ - Alert deprecated: module Stdlib.Pervasives - Use Stdlib instead. - - If you need to stay compatible with OCaml < 4.07, you can use the - stdlib-shims library: https://github.com/ocaml/stdlib-shims - File "common/my_utils.ml", line 150, characters 4-23: - 150 | Pervasives.infinity (* a value *) - ^^^^^^^^^^^^^^^^^^^ - Alert deprecated: module Stdlib.Pervasives - Use Stdlib instead. - - If you need to stay compatible with OCaml < 4.07, you can use the - stdlib-shims library: https://github.com/ocaml/stdlib-shims - File "common/my_utils.ml", line 156, characters 4-18: - 156 | Pervasives.max (* a fun *) - ^^^^^^^^^^^^^^ - Alert deprecated: module Stdlib.Pervasives - Use Stdlib instead. - - If you need to stay compatible with OCaml < 4.07, you can use the - stdlib-shims library: https://github.com/ocaml/stdlib-shims - File "common/my_utils.ml", line 157, characters 4-27: - 157 | Pervasives.neg_infinity (* a value *) - ^^^^^^^^^^^^^^^^^^^^^^^ - Alert deprecated: module Stdlib.Pervasives - Use Stdlib instead. - - If you need to stay compatible with OCaml < 4.07, you can use the - stdlib-shims library: https://github.com/ocaml/stdlib-shims - File "common/my_utils.ml", line 610, characters 34-52: - 610 | A.fast_sort (fun (a,_) (b,_) -> Pervasives.compare a b) arr; - ^^^^^^^^^^^^^^^^^^ - Alert deprecated: module Stdlib.Pervasives - Use Stdlib instead. - - If you need to stay compatible with OCaml < 4.07, you can use the - stdlib-shims library: https://github.com/ocaml/stdlib-shims - File "common/my_utils.ml", line 630, characters 44-62: - 630 | let ans = L.fast_sort (fun (_,a) (_,b) -> Pervasives.compare a b) ans in - ^^^^^^^^^^^^^^^^^^ - Alert deprecated: module Stdlib.Pervasives - Use Stdlib instead. - - If you need to stay compatible with OCaml < 4.07, you can use the - stdlib-shims library: https://github.com/ocaml/stdlib-shims - - [27 of 69] Compiling Mol2_reader - [28 of 69] Compiling Codec - [29 of 69] Compiling Mol2_tool - [30 of 69] Compiling Pqr_tool - [31 of 69] Compiling Pl_tool - [32 of 69] Compiling Broto_1984_autocorr - [33 of 69] Linking executable dist/build/acpc/acpc - [34 of 69] Linking executable dist/build/acpc_consrank/acpc_consrank - [35 of 69] Compiling Scorer - [36 of 69] Linking executable dist/build/acpc_ertool/acpc_ertool - [37 of 69] Compiling Common.ROC - [38 of 69] Compiling Common.Atom - [39 of 69] Linking executable dist/build/acpc_auctool/acpc_auctool - [40 of 69] Linking executable dist/build/acpc_mol2reader/acpc_mol2reader - [41 of 69] Linking executable dist/build/acpc_codec/acpc_codec - [42 of 69] Linking executable dist/build/acpc_mol2tool/acpc_mol2tool - [43 of 69] Linking executable dist/build/acpc_pqrtool/acpc_pqrtool - [44 of 69] Linking executable dist/build/acpc_pltool/acpc_pltool - [45 of 69] Linking executable dist/build/broto84/broto84 - [46 of 69] Checking dist/build/acpc_consrank - [47 of 69] Checking dist/build/acpc - [48 of 69] Linking executable dist/build/acpc_scorer/acpc_scorer - [49 of 69] Compiling Common.Consensus - [50 of 69] Compiling Common.Molecule - [51 of 69] Checking dist/build/acpc_ertool - [52 of 69] Checking dist/build/acpc_auctool - [53 of 69] Checking dist/build/acpc_mol2reader - [54 of 69] Checking dist/build/acpc_codec - [55 of 69] Checking dist/build/acpc_mol2tool - [56 of 69] Checking dist/build/acpc_pqrtool - [57 of 69] Checking dist/build/acpc_pltool - [58 of 69] Checking dist/build/broto84 - [59 of 69] Compiling Common.Mol2_parser - [60 of 69] Compiling Common.Pqr_parser - [61 of 69] Checking dist/build/acpc_scorer - [62 of 69] Compiling Common.Pl_parser - [63 of 69] Compiling Common.Molecular_graph - [64 of 69] Compiling Common.Autocorr - File "common/molecular_graph.ml", line 17, characters 18-36: - 17 | let compare = Pervasives.compare - ^^^^^^^^^^^^^^^^^^ - Alert deprecated: module Stdlib.Pervasives - Use Stdlib instead. - - If you need to stay compatible with OCaml < 4.07, you can use the - stdlib-shims library: https://github.com/ocaml/stdlib-shims - - [65 of 69] Compiling Common.Query - [66 of 69] Packing Common - [67 of 69] Compiling Par_acpc - [68 of 69] Linking executable dist/build/acpc_par/acpc_par - [69 of 69] Checking dist/build/acpc_par -> compiled acpc.1.2.3 [acpc: cp] + /usr/bin/cp "dist/build/acpc/acpc" "dist/build/acpc_par/acpc_par" "dist/build/acpc_consrank/acpc_consrank" "dist/build/acpc_scorer/acpc_scorer" "dist/build/acpc_ertool/acpc_ertool" "dist/build/acpc_auctool/acpc_auctool" "dist/build/acpc_mol2reader/acpc_mol2reader" "dist/build/acpc_codec/acpc_codec" "dist/build/acpc_mol2tool/acpc_mol2tool" "dist/build/acpc_pqrtool/acpc_pqrtool" "dist/build/acpc_pltool/acpc_pltool" "/home/opam/.opam/default/bin" (CWD=/home/opam/.opam/default/.opam-switch/build/acpc.1.2.3) -> installed acpc.1.2.3 [WARNING] Opam package conf-gnuplot.0.1 depends on the following system package that can no longer be found: gnuplot-x11 === STDERR === 2026-06-24 16:02.21: OK: build acpc.1.2.3 (runc: 8.7s, disk: 21KB) 2026-06-24 16:02.21: Job succeeded