Build:
- 0
2026-06-20 21:08.57: New job: build biotk.0.3 (5f4392697954) 2026-06-20 21:08.57: Waiting for resource in pool day11-builds 2026-06-20 21:09.56: Got resource from pool day11-builds 2026-06-20 21:09.56: [profile full] build biotk.0.3 2026-06-20 21:09.56: build biotk.0.3 (5f4392697954) === DEPENDENCIES (112 transitive) === angstrom.0.16.1 9dba91b01df8 angstrom-unix.0.16.1 c2f047ec96f0 base.v0.17.3 ed6c283aa9a9 base-bigarray.base dfc2a7e726c3 base-threads.base b7164ff76afe base-unix.base 839dc585f12d base_bigstring.v0.17.0 d16e659ebbfc base_quickcheck.v0.17.1 690ee416b76c bigstringaf.0.10.0 ada01208baf7 bin_prot.v0.17.0-1 46f2bffee606 binning.0.0.0 55e191797853 camlzip.1.14 1beb9e553a26 capitalization.v0.17.0 b4acddcc4471 cmdliner.2.1.1 c4607a09ecef compiler-cloning.enabled 0d2606125f88 conf-gsl.2 026d1b23d115 conf-pkg-config.5 64c6b37d622b conf-zlib.1 6a8e9cb470aa core.v0.17.2 b048c61509fb core_kernel.v0.17.0 31dd9a9bfe37 core_unix.v0.17.1 8733322aa486 cppo.1.8.0 2299340fea15 crunch.4.0.0 843ac781c48b csexp.1.5.2 315ecef51574 csvfields.v0.17.0 7abe24e7100f dune.3.23.1 dbfeecb5ca10 dune-configurator.3.23.1 8afe79196456 expect_test_helpers_core.v0.17.0 448e8c5d03de fieldslib.v0.17.0 6ad5e7779086 fmt.0.11.0 1a2e11cf0823 gel.v0.17.0 f4df9b8478f8 gg.1.0.0 d40a30660387 gsl.1.25.1 df7c55c3f1f4 int_repr.v0.17.0 d8e410524ee7 jane-street-headers.v0.17.0 299c5dd27bed jst-config.v0.17.0 7ab7e404589b num.1.6 94f72f650e98 ocaml.5.5.0 1b4132bddf48 ocaml-base-compiler.5.5.0 1901c3a760c1 ocaml-compiler.5.5.0 5f593a0b4a8c ocaml-compiler-libs.v0.17.0 6373bfde8e91 ocaml-syntax-shims.1.0.0 ab53fc8c6e2d ocaml_intrinsics_kernel.v0.17.2 1db91ca91065 ocamlbuild.0.16.1 b485a4f69c01 ocamlfind.1.9.8 5b46f9d92bbd otfm.0.4.0 7acbdc3c35b0 parsexp.v0.17.0 7d275d842ed2 ppx_assert.v0.17.0 8422f1ac5b96 ppx_base.v0.17.0 c0dbf0dc4c41 ppx_bench.v0.17.1 c3136caf237a ppx_bin_prot.v0.17.1 e03031f90c05 ppx_cold.v0.17.0 acdc277d6ef1 ppx_compare.v0.17.0 0c21723f9d91 ppx_conv_func.v0.17.0 cec01640236d ppx_csv_conv.v0.17.0 1d3714936dbb ppx_custom_printf.v0.17.0 7bd34c30fdb5 ppx_derivers.1.2.1 2a3f00c1f6d2 ppx_deriving.6.1.1 f86af3c9f71e ppx_diff.v0.17.1 ca468bc661d7 ppx_disable_unused_warnings.v0.17.0 434f1118afa7 ppx_enumerate.v0.17.0 7bc225fc7990 ppx_expect.v0.17.3 f7b53c19cb8a ppx_fields_conv.v0.17.0 dea4f6e7bf0e ppx_fixed_literal.v0.17.0 97debba648a4 ppx_globalize.v0.17.2 eb8190d38429 ppx_hash.v0.17.0 e89294ea28f2 ppx_here.v0.17.0 45fbf7ea9ec7 ppx_ignore_instrumentation.v0.17.0 725c0958a021 ppx_inline_test.v0.17.1 c213f984cdc0 ppx_jane.v0.17.0 dd88265c5418 ppx_let.v0.17.1 8c50e6c10143 ppx_log.v0.17.0 14333e8235f0 ppx_module_timer.v0.17.0 7911f2fda27f ppx_optcomp.v0.17.1 3cf0cf3255de ppx_optional.v0.17.0 11d9c018c1bb ppx_pipebang.v0.17.0 ea576be6053c ppx_sexp_conv.v0.17.1 46278ff8ffcb ppx_sexp_message.v0.17.0 8de0766ef30a ppx_sexp_value.v0.17.0 1004bdb57a22 ppx_stable.v0.17.1 0fc9f3fa5b7f ppx_stable_witness.v0.17.0 23bfc17e3580 ppx_string.v0.17.0 06d3add2d534 ppx_string_conv.v0.17.0 9cfbfc449705 ppx_tydi.v0.17.1 24345b1a3fba ppx_typerep_conv.v0.17.1 bc7f874cc821 ppx_variants_conv.v0.17.1 0cdb59673ce9 ppxlib.0.38.0 c01fe47fa7a4 ppxlib_jane.v0.17.4 8a4c4328ddf0 ptime.1.2.0 e003e9829314 re.1.14.0 a474ef408490 result.1.5 33cb91729092 rresult.0.7.0 673600dffe08 seq.base 1fbc0454e0be sexp_pretty.v0.17.0 8b69d8b9fcc4 sexplib.v0.17.0 c0adfbf904aa sexplib0.v0.17.0 313244870034 spawn.v0.17.0 35c55f8aad39 splittable_random.v0.17.0 a442cac09d94 stdio.v0.17.0 e14f294458c2 stdlib-shims.0.3.0 9047e6396dc4 stringext.1.6.0 2d737b0d4e97 time_now.v0.17.0 cce634c26fb0 timezone.v0.17.0 a89f6f69b09f topkg.1.1.1 8e3718e4cf5c typerep.v0.17.1 96f0dfa15ec4 tyxml.4.6.0 3ff27567754c uopt.v0.17.0 833dff7c545a uri.4.4.0 58822d5a1675 uutf.1.0.4 b530bbafc7a1 variantslib.v0.17.0 278a7ee3a7f8 vg.0.9.5 ceb2161996b5 zlib.0.8 c67472f5132e === STDOUT === Processing: [default: loading data] [biotk.0.3: dl] [biotk.0.3: extract] -> retrieved biotk.0.3 (https://opam.ocaml.org/cache) [biotk: dune build] + /home/opam/.opam/default/bin/dune "build" "-p" "biotk" "-j" "39" "@install" (CWD=/home/opam/.opam/default/.opam-switch/build/biotk.0.3) - (cd _build/default/lib/croquis && /home/opam/.opam/default/bin/ocaml-crunch --mode plain ../../fonts --output font_data.ml) - Generating font_data.ml - Skipping generation of .mli - (cd _build/default/lib && /usr/bin/gcc -O2 -fno-strict-aliasing -fwrapv -fPIC -pthread -D_FILE_OFFSET_BITS=64 -Wall -fdiagnostics-color=always -O3 -g -I /home/opam/.opam/default/lib/ocaml -I /home/opam/.opam/default/lib/angstrom -I /home/opam/.opam/default/lib/angstrom-unix -I /home/opam/.opam/default/lib/base -I /home/opam/.opam/default/lib/base/base_internalhash_types -I /home/opam/.opam/default/lib/base/md5 -I /home/opam/.opam/default/lib/base/shadow_stdlib -I /home/opam/.opam/default/lib/base_bigstring -I /home/opam/.opam/default/lib/base_quickcheck -I /home/opam/.opam/default/lib/base_quickcheck/ppx_quickcheck/runtime -I /home/opam/.opam/default/lib/bigstringaf -I /home/opam/.opam/default/lib/bin_prot -I /home/opam/.opam/default/lib/bin_prot/shape -I /home/opam/.opam/default/lib/binning -I /home/opam/.opam/default/lib/core -I /home/opam/.opam/default/lib/core/base_for_tests -I /home/opam/.opam/default/lib/core/command -I /home/opam/.opam/default/lib/core/filename_base -I /home/opam/.opam/default/lib/core/heap_block -I /home/opam/.opam/default/lib/core/univ_map -I /home/opam/.opam/default/lib/core/validate -I /home/opam/.opam/default/lib/core_kernel -I /home/opam/.opam/default/lib/core_kernel/binary_packing -I /home/opam/.opam/default/lib/core_kernel/caml_threads -I /home/opam/.opam/default/lib/core_kernel/caml_unix -I /home/opam/.opam/default/lib/core_kernel/flags -I /home/opam/.opam/default/lib/core_unix -I /home/opam/.opam/default/lib/core_unix/error_checking_mutex -I /home/opam/.opam/default/lib/core_unix/signal_unix -I /home/opam/.opam/default/lib/csvfields -I /home/opam/.opam/default/lib/csvfields/csvlib -I /home/opam/.opam/default/lib/csvfields/xml-light -I /home/opam/.opam/default/lib/fieldslib -I /home/opam/.opam/default/lib/fmt -I /home/opam/.opam/default/lib/gel -I /home/opam/.opam/default/lib/gg -I /home/opam/.opam/default/lib/gsl -I /home/opam/.opam/default/lib/int_repr -I /home/opam/.opam/default/lib/jane-street-headers -I /home/opam/.opam/default/lib/num -I /home/opam/.opam/default/lib/ocaml/threads -I /home/opam/.opam/default/lib/ocaml/unix -I /home/opam/.opam/default/lib/ocaml_intrinsics_kernel -I /home/opam/.opam/default/lib/otfm -I /home/opam/.opam/default/lib/parsexp -I /home/opam/.opam/default/lib/ppx_assert/runtime-lib -I /home/opam/.opam/default/lib/ppx_bench/runtime-lib -I /home/opam/.opam/default/lib/ppx_compare/runtime-lib -I /home/opam/.opam/default/lib/ppx_deriving/runtime -I /home/opam/.opam/default/lib/ppx_diff/diffable -I /home/opam/.opam/default/lib/ppx_diff/diffable_cinaps -I /home/opam/.opam/default/lib/ppx_enumerate/runtime-lib -I /home/opam/.opam/default/lib/ppx_expect/config -I /home/opam/.opam/default/lib/ppx_expect/config_types -I /home/opam/.opam/default/lib/ppx_expect/make_corrected_file -I /home/opam/.opam/default/lib/ppx_expect/runtime -I /home/opam/.opam/default/lib/ppx_hash/runtime-lib -I /home/opam/.opam/default/lib/ppx_here/runtime-lib -I /home/opam/.opam/default/lib/ppx_inline_test/config -I /home/opam/.opam/default/lib/ppx_inline_test/runtime-lib -I /home/opam/.opam/default/lib/ppx_log/syntax -I /home/opam/.opam/default/lib/ppx_log/types -I /home/opam/.opam/default/lib/ppx_module_timer/runtime -I /home/opam/.opam/default/lib/ppx_sexp_conv/runtime-lib -I /home/opam/.opam/default/lib/ppx_stable_witness/runtime -I /home/opam/.opam/default/lib/ppx_stable_witness/stable_witness -I /home/opam/.opam/default/lib/ppx_string/runtime -I /home/opam/.opam/default/lib/ppxlib/print_diff -I /home/opam/.opam/default/lib/re -I /home/opam/.opam/default/lib/rresult -I /home/opam/.opam/default/lib/seq -I /home/opam/.opam/default/lib/sexplib -I /home/opam/.opam/default/lib/sexplib/unix -I /home/opam/.opam/default/lib/sexplib0 -I /home/opam/.opam/default/lib/spawn -I /home/opam/.opam/default/lib/splittable_random -I /home/opam/.opam/default/lib/stdio -I /home/opam/.opam/default/lib/stringext -I /home/opam/.opam/default/lib/time_now -I /home/opam/.opam/default/lib/typerep -I /home/opam/.opam/default/lib/tyxml -I /home/opam/.opam/default/lib/tyxml/functor -I /home/opam/.opam/default/lib/uri -I /home/opam/.opam/default/lib/uutf -I /home/opam/.opam/default/lib/variantslib -I /home/opam/.opam/default/lib/vg -I /home/opam/.opam/default/lib/vg/pdf -I /home/opam/.opam/default/lib/zip -I croquis -o pwm_stub.o -c pwm_stub.c) - In file included from pwm_stub.c:3: - pwm_stub.c: In function 'biotk_pwm_scan': - /home/opam/.opam/default/lib/ocaml/caml/mlvalues.h:352:36: warning: array subscript has type 'char' [-Wchar-subscripts] - 352 | #define Byte(x, i) (((char *) (x)) [i]) /* Also an l-value. */ - | ~~~~~~~~~~~~~~~~^~~~ - /home/opam/.opam/default/lib/ocaml/caml/mlvalues.h:376:37: note: in definition of macro 'Double_val' - 376 | #define Double_val(v) (* (double *)(v)) - | ^ - /home/opam/.opam/default/lib/ocaml/caml/mlvalues.h:410:29: note: in expansion of macro 'Double_flat_field' - 410 | #define Double_field(v,i) Double_flat_field(v,i) - | ^~~~~~~~~~~~~~~~~ - pwm_stub.c:32:16: note: in expansion of macro 'Double_field' - 32 | score += Double_field(Field(mat, j), char_tab[Byte(seq, i + j)]); - | ^~~~~~~~~~~~ - pwm_stub.c:32:53: note: in expansion of macro 'Byte' - 32 | score += Double_field(Field(mat, j), char_tab[Byte(seq, i + j)]); - | ^~~~ - pwm_stub.c: In function 'biotk_opt_pwm_scan': - /home/opam/.opam/default/lib/ocaml/caml/mlvalues.h:352:36: warning: array subscript has type 'char' [-Wchar-subscripts] - 352 | #define Byte(x, i) (((char *) (x)) [i]) /* Also an l-value. */ - | ~~~~~~~~~~~~~~~~^~~~ - /home/opam/.opam/default/lib/ocaml/caml/mlvalues.h:376:37: note: in definition of macro 'Double_val' - 376 | #define Double_val(v) (* (double *)(v)) - | ^ - /home/opam/.opam/default/lib/ocaml/caml/mlvalues.h:410:29: note: in expansion of macro 'Double_flat_field' - 410 | #define Double_field(v,i) Double_flat_field(v,i) - | ^~~~~~~~~~~~~~~~~ - pwm_stub.c:87:16: note: in expansion of macro 'Double_field' - 87 | score += Double_field(Field(mat, j), char_tab[Byte(seq, i + j)]); - | ^~~~~~~~~~~~ - pwm_stub.c:87:53: note: in expansion of macro 'Byte' - 87 | score += Double_field(Field(mat, j), char_tab[Byte(seq, i + j)]); - | ^~~~ -> compiled biotk.0.3 -> installed biotk.0.3 [WARNING] Opam packages conf-gsl.2 and conf-zlib.1 depend on the following system packages that are no longer installed: libgsl-dev zlib1g-dev - conf-gsl.2: depends on libgsl-dev - conf-zlib.1: depends on zlib1g-dev === STDERR === 2026-06-20 21:10.27: OK: build biotk.0.3 (runc: 18.1s, disk: 24KB) 2026-06-20 21:10.27: Job succeeded