Build:
- 0
2026-06-16 21:23.50: New job: build biotk.0.3 (cbf6584065e2) 2026-06-16 21:23.50: Waiting for resource in pool day11-builds 2026-06-16 21:35.39: Got resource from pool day11-builds 2026-06-16 21:35.39: [profile full] build biotk.0.3 2026-06-16 21:35.39: build biotk.0.3 (cbf6584065e2) === DEPENDENCIES (112 transitive) === angstrom.0.16.1 acdef106c8a9 angstrom-unix.0.16.1 dd2afe95a27d base.v0.17.3 876ca94bfeea base-bigarray.base dfc2a7e726c3 base-threads.base b7164ff76afe base-unix.base 839dc585f12d base_bigstring.v0.17.0 2d9970826ac9 base_quickcheck.v0.17.1 4e50a7950e9d bigstringaf.0.10.0 cef54f1cd12e bin_prot.v0.17.0-1 55ba119c45a2 binning.0.0.0 b3a7902bb810 camlzip.1.14 d9d16698ed9d capitalization.v0.17.0 4485de492189 cmdliner.2.1.1 36fe5a2b1d3e conf-gsl.2 026d1b23d115 conf-pkg-config.5 64c6b37d622b conf-zlib.1 6a8e9cb470aa core.v0.17.2 3fe959032d3a core_kernel.v0.17.0 6a65498d3290 core_unix.v0.17.1 797d6acaf919 cppo.1.8.0 3c775a388c9d crunch.4.0.0 6c15ff0939a6 csexp.1.5.2 e2491a88a8e9 csvfields.v0.17.0 1032f4d44a94 dune.3.23.1 d50060dd2cab dune-configurator.3.23.1 83dd42d9abe2 expect_test_helpers_core.v0.17.0 9a224a221e99 fieldslib.v0.17.0 9769d3c8d978 fmt.0.11.0 dd1cb7046ac0 gel.v0.17.0 6b44ef0bc1ee gg.1.0.0 c4884e01a657 gsl.1.25.1 3ea4f67d99c0 int_repr.v0.17.0 b14f537efb80 jane-street-headers.v0.17.0 aa10f2b137d5 jst-config.v0.17.0 064b0c8c9511 num.1.6 158dee1e5f8c ocaml.5.4.1 708fed352b2a ocaml-base-compiler.5.4.1 89b85703f841 ocaml-compiler.5.4.1 a719b8419b8e ocaml-compiler-libs.v0.17.0 bb35244dbd80 ocaml-config.3 aa27f63940d8 ocaml-syntax-shims.1.0.0 121d9d9e944d ocaml_intrinsics_kernel.v0.17.2 faf575551ca9 ocamlbuild.0.16.1 069fc1e567af ocamlfind.1.9.8 5cfa73ef65e7 otfm.0.4.0 1190ef6d0b68 parsexp.v0.17.0 3e5ce3992c1d ppx_assert.v0.17.0 4fdbcf96c66a ppx_base.v0.17.0 6a20c5d7f872 ppx_bench.v0.17.1 38e044fb7b33 ppx_bin_prot.v0.17.1 4ea4af37c1e0 ppx_cold.v0.17.0 d9892f8a9678 ppx_compare.v0.17.0 265ac1f85a8d ppx_conv_func.v0.17.0 eca77fc93b82 ppx_csv_conv.v0.17.0 159d84c18d48 ppx_custom_printf.v0.17.0 987abca7b91a ppx_derivers.1.2.1 48d8f0a02148 ppx_deriving.6.1.1 21563319369c ppx_diff.v0.17.1 0a924ca105ee ppx_disable_unused_warnings.v0.17.0 66a207d02dfb ppx_enumerate.v0.17.0 6c421cbd81e8 ppx_expect.v0.17.3 31639e2a1486 ppx_fields_conv.v0.17.0 195a9a9f5463 ppx_fixed_literal.v0.17.0 0f4d6dc50f05 ppx_globalize.v0.17.2 0bf7b4fa32d2 ppx_hash.v0.17.0 1b88fe8478c5 ppx_here.v0.17.0 786235a9a0d3 ppx_ignore_instrumentation.v0.17.0 2f50e832ee59 ppx_inline_test.v0.17.1 87a1fe4ea12c ppx_jane.v0.17.0 ee06d3553d74 ppx_let.v0.17.1 250cf47e783f ppx_log.v0.17.0 0345fa59fbd0 ppx_module_timer.v0.17.0 c7b08bec5ebb ppx_optcomp.v0.17.1 f4f7ae1ac9ef ppx_optional.v0.17.0 fa99f1e4ab84 ppx_pipebang.v0.17.0 322e41a66320 ppx_sexp_conv.v0.17.1 3f62d77bb0bb ppx_sexp_message.v0.17.0 f5c7a4c19ad7 ppx_sexp_value.v0.17.0 39aa01219ff2 ppx_stable.v0.17.1 2832da3523dd ppx_stable_witness.v0.17.0 a86c279bf540 ppx_string.v0.17.0 2591f5a0aa2c ppx_string_conv.v0.17.0 1d4c3d334bb9 ppx_tydi.v0.17.1 9d1fd2034747 ppx_typerep_conv.v0.17.1 ce8be0723df3 ppx_variants_conv.v0.17.1 275dfe1b2c7b ppxlib.0.38.0 089dd9eec9cd ppxlib_jane.v0.17.4 a62b992f5e07 ptime.1.2.0 bbf602fc20a0 re.1.14.0 5782bfeeaea2 result.1.5 bde760920416 rresult.0.7.0 02b516a972ff seq.base 75c7a6b170f3 sexp_pretty.v0.17.0 faba7d47118c sexplib.v0.17.0 06685797e3a3 sexplib0.v0.17.0 3a274f46ef22 spawn.v0.17.0 cca167fda31f splittable_random.v0.17.0 57850dd793b7 stdio.v0.17.0 21fc57d63ba6 stdlib-shims.0.3.0 b64bd5274094 stringext.1.6.0 d48b69dde427 time_now.v0.17.0 59a9c0b675fa timezone.v0.17.0 1bf88fa68d08 topkg.1.1.1 4a88955a28b6 typerep.v0.17.1 97f3c587b0ff tyxml.4.6.0 3f928088e8f5 uopt.v0.17.0 f344a35b3f22 uri.4.4.0 c8b58c833e48 uutf.1.0.4 f610a7513d49 variantslib.v0.17.0 775a5e3461ce vg.0.9.5 5288e62e9e5b zlib.0.8 6d452246fab5 === STDOUT === Processing: [default: loading data] [biotk.0.3: dl] [biotk.0.3: extract] -> retrieved biotk.0.3 (https://opam.ocaml.org/cache) [biotk: dune build] + /home/opam/.opam/default/bin/dune "build" "-p" "biotk" "-j" "39" "@install" (CWD=/home/opam/.opam/default/.opam-switch/build/biotk.0.3) - (cd _build/default/lib/croquis && /home/opam/.opam/default/bin/ocaml-crunch --mode plain ../../fonts --output font_data.ml) - Generating font_data.ml - Skipping generation of .mli - (cd _build/default/lib && /usr/bin/gcc -O2 -fno-strict-aliasing -fwrapv -fPIC -pthread -D_FILE_OFFSET_BITS=64 -Wall -fdiagnostics-color=always -O3 -g -I /home/opam/.opam/default/lib/ocaml -I /home/opam/.opam/default/lib/angstrom -I /home/opam/.opam/default/lib/angstrom-unix -I /home/opam/.opam/default/lib/base -I /home/opam/.opam/default/lib/base/base_internalhash_types -I /home/opam/.opam/default/lib/base/md5 -I /home/opam/.opam/default/lib/base/shadow_stdlib -I /home/opam/.opam/default/lib/base_bigstring -I /home/opam/.opam/default/lib/base_quickcheck -I /home/opam/.opam/default/lib/base_quickcheck/ppx_quickcheck/runtime -I /home/opam/.opam/default/lib/bigstringaf -I /home/opam/.opam/default/lib/bin_prot -I /home/opam/.opam/default/lib/bin_prot/shape -I /home/opam/.opam/default/lib/binning -I /home/opam/.opam/default/lib/core -I /home/opam/.opam/default/lib/core/base_for_tests -I /home/opam/.opam/default/lib/core/command -I /home/opam/.opam/default/lib/core/filename_base -I /home/opam/.opam/default/lib/core/heap_block -I /home/opam/.opam/default/lib/core/univ_map -I /home/opam/.opam/default/lib/core/validate -I /home/opam/.opam/default/lib/core_kernel -I /home/opam/.opam/default/lib/core_kernel/binary_packing -I /home/opam/.opam/default/lib/core_kernel/caml_threads -I /home/opam/.opam/default/lib/core_kernel/caml_unix -I /home/opam/.opam/default/lib/core_kernel/flags -I /home/opam/.opam/default/lib/core_unix -I /home/opam/.opam/default/lib/core_unix/error_checking_mutex -I /home/opam/.opam/default/lib/core_unix/signal_unix -I /home/opam/.opam/default/lib/csvfields -I /home/opam/.opam/default/lib/csvfields/csvlib -I /home/opam/.opam/default/lib/csvfields/xml-light -I /home/opam/.opam/default/lib/fieldslib -I /home/opam/.opam/default/lib/fmt -I /home/opam/.opam/default/lib/gel -I /home/opam/.opam/default/lib/gg -I /home/opam/.opam/default/lib/gsl -I /home/opam/.opam/default/lib/int_repr -I /home/opam/.opam/default/lib/jane-street-headers -I /home/opam/.opam/default/lib/num -I /home/opam/.opam/default/lib/ocaml/threads -I /home/opam/.opam/default/lib/ocaml/unix -I /home/opam/.opam/default/lib/ocaml_intrinsics_kernel -I /home/opam/.opam/default/lib/otfm -I /home/opam/.opam/default/lib/parsexp -I /home/opam/.opam/default/lib/ppx_assert/runtime-lib -I /home/opam/.opam/default/lib/ppx_bench/runtime-lib -I /home/opam/.opam/default/lib/ppx_compare/runtime-lib -I /home/opam/.opam/default/lib/ppx_deriving/runtime -I /home/opam/.opam/default/lib/ppx_diff/diffable -I /home/opam/.opam/default/lib/ppx_diff/diffable_cinaps -I /home/opam/.opam/default/lib/ppx_enumerate/runtime-lib -I /home/opam/.opam/default/lib/ppx_expect/config -I /home/opam/.opam/default/lib/ppx_expect/config_types -I /home/opam/.opam/default/lib/ppx_expect/make_corrected_file -I /home/opam/.opam/default/lib/ppx_expect/runtime -I /home/opam/.opam/default/lib/ppx_hash/runtime-lib -I /home/opam/.opam/default/lib/ppx_here/runtime-lib -I /home/opam/.opam/default/lib/ppx_inline_test/config -I /home/opam/.opam/default/lib/ppx_inline_test/runtime-lib -I /home/opam/.opam/default/lib/ppx_log/syntax -I /home/opam/.opam/default/lib/ppx_log/types -I /home/opam/.opam/default/lib/ppx_module_timer/runtime -I /home/opam/.opam/default/lib/ppx_sexp_conv/runtime-lib -I /home/opam/.opam/default/lib/ppx_stable_witness/runtime -I /home/opam/.opam/default/lib/ppx_stable_witness/stable_witness -I /home/opam/.opam/default/lib/ppx_string/runtime -I /home/opam/.opam/default/lib/ppxlib/print_diff -I /home/opam/.opam/default/lib/re -I /home/opam/.opam/default/lib/rresult -I /home/opam/.opam/default/lib/seq -I /home/opam/.opam/default/lib/sexplib -I /home/opam/.opam/default/lib/sexplib/unix -I /home/opam/.opam/default/lib/sexplib0 -I /home/opam/.opam/default/lib/spawn -I /home/opam/.opam/default/lib/splittable_random -I /home/opam/.opam/default/lib/stdio -I /home/opam/.opam/default/lib/stringext -I /home/opam/.opam/default/lib/time_now -I /home/opam/.opam/default/lib/typerep -I /home/opam/.opam/default/lib/tyxml -I /home/opam/.opam/default/lib/tyxml/functor -I /home/opam/.opam/default/lib/uri -I /home/opam/.opam/default/lib/uutf -I /home/opam/.opam/default/lib/variantslib -I /home/opam/.opam/default/lib/vg -I /home/opam/.opam/default/lib/vg/pdf -I /home/opam/.opam/default/lib/zip -I croquis -o pwm_stub.o -c pwm_stub.c) - In file included from pwm_stub.c:3: - pwm_stub.c: In function 'biotk_pwm_scan': - /home/opam/.opam/default/lib/ocaml/caml/mlvalues.h:352:36: warning: array subscript has type 'char' [-Wchar-subscripts] - 352 | #define Byte(x, i) (((char *) (x)) [i]) /* Also an l-value. */ - | ~~~~~~~~~~~~~~~~^~~~ - /home/opam/.opam/default/lib/ocaml/caml/mlvalues.h:376:37: note: in definition of macro 'Double_val' - 376 | #define Double_val(v) (* (double *)(v)) - | ^ - /home/opam/.opam/default/lib/ocaml/caml/mlvalues.h:410:29: note: in expansion of macro 'Double_flat_field' - 410 | #define Double_field(v,i) Double_flat_field(v,i) - | ^~~~~~~~~~~~~~~~~ - pwm_stub.c:32:16: note: in expansion of macro 'Double_field' - 32 | score += Double_field(Field(mat, j), char_tab[Byte(seq, i + j)]); - | ^~~~~~~~~~~~ - pwm_stub.c:32:53: note: in expansion of macro 'Byte' - 32 | score += Double_field(Field(mat, j), char_tab[Byte(seq, i + j)]); - | ^~~~ - pwm_stub.c: In function 'biotk_opt_pwm_scan': - /home/opam/.opam/default/lib/ocaml/caml/mlvalues.h:352:36: warning: array subscript has type 'char' [-Wchar-subscripts] - 352 | #define Byte(x, i) (((char *) (x)) [i]) /* Also an l-value. */ - | ~~~~~~~~~~~~~~~~^~~~ - /home/opam/.opam/default/lib/ocaml/caml/mlvalues.h:376:37: note: in definition of macro 'Double_val' - 376 | #define Double_val(v) (* (double *)(v)) - | ^ - /home/opam/.opam/default/lib/ocaml/caml/mlvalues.h:410:29: note: in expansion of macro 'Double_flat_field' - 410 | #define Double_field(v,i) Double_flat_field(v,i) - | ^~~~~~~~~~~~~~~~~ - pwm_stub.c:87:16: note: in expansion of macro 'Double_field' - 87 | score += Double_field(Field(mat, j), char_tab[Byte(seq, i + j)]); - | ^~~~~~~~~~~~ - pwm_stub.c:87:53: note: in expansion of macro 'Byte' - 87 | score += Double_field(Field(mat, j), char_tab[Byte(seq, i + j)]); - | ^~~~ -> compiled biotk.0.3 -> installed biotk.0.3 [WARNING] Opam packages conf-gsl.2 and conf-zlib.1 depend on the following system packages that are no longer installed: libgsl-dev zlib1g-dev - conf-gsl.2: depends on libgsl-dev - conf-zlib.1: depends on zlib1g-dev === STDERR === 2026-06-16 21:37.19: OK: build biotk.0.3 (runc: 76.7s, disk: 24KB) 2026-06-16 21:39.14: Job succeeded