Build:
- 0
2026-06-16 16:31.07: New job: build lbvs_consent.2.2.0 (85ec9da72eb9)
2026-06-16 16:31.07: Waiting for resource in pool day11-builds
2026-06-16 17:07.38: Got resource from pool day11-builds
2026-06-16 17:07.38: [profile full] build lbvs_consent.2.2.0
2026-06-16 17:07.38: build lbvs_consent.2.2.0 (85ec9da72eb9)
=== DEPENDENCIES (42 transitive) ===
base-bigarray.base dfc2a7e726c3
base-bytes.base 4e354a32e9ce
base-threads.base b7164ff76afe
base-unix.base 839dc585f12d
batteries.3.10.0 8365a4954bdb
bitv.2.1 b8fe040beb77
camlp-streams.5.0.1 c5b4d7818010
camlzip.1.14 d9d16698ed9d
conf-autoconf.0.2 b3cd190cf0b5
conf-boost.1 81564cfffe81
conf-openbabel.0.1 9b896cca91ac
conf-pkg-config.5 64c6b37d622b
conf-python-3.9.0.0 9f0bbc328e53
conf-rdkit.1 b48136280c89
conf-zlib.1 6a8e9cb470aa
cpm.12.2.0 78507cd031d3
cpu.2.0.0 2aa083905659
csexp.1.5.2 e2491a88a8e9
dokeysto.4.0.2 94cb37d442db
dolog.6.0.0 256323421a98
dune.3.23.1 d50060dd2cab
dune-configurator.3.23.1 83dd42d9abe2
extunix.0.4.4 fcf202402325
minicli.5.0.2 f8650c9133ea
num.1.6 158dee1e5f8c
ocaml.5.4.1 708fed352b2a
ocaml-base-compiler.5.4.1 89b85703f841
ocaml-compiler.5.4.1 a719b8419b8e
ocaml-compiler-libs.v0.17.0 bb35244dbd80
ocaml-config.3 aa27f63940d8
ocamlfind.1.9.8 5cfa73ef65e7
ounit2.2.2.7 41b9a3ff3c88
parany.14.0.1 570af770fd2a
ppx_derivers.1.2.1 48d8f0a02148
ppxlib.0.38.0 089dd9eec9cd
qcheck.0.91 7de764d60004
qcheck-core.0.91 da330d24d089
qcheck-ounit.0.91 165987d136db
seq.base 75c7a6b170f3
sexplib0.v0.17.0 3a274f46ef22
stdlib-shims.0.3.0 b64bd5274094
vpt.5.0.0 34f4c3006c52
=== STDOUT ===
Processing: [default: loading data]
[lbvs_consent.2.2.0: dl]
[lbvs_consent.2.2.0: extract]
[lbvs_consent.2.2.0/makefile.patch: dl]
-> retrieved lbvs_consent.2.2.0 (https://opam.ocaml.org/cache)
[lbvs_consent: patch] applying makefile.patch
[lbvs_consent: make obmaccs]
+ /usr/bin/make "obmaccs" (CWD=/home/opam/.opam/default/.opam-switch/build/lbvs_consent.2.2.0)
- cd src; make
- make[1]: Entering directory '/home/opam/.opam/default/.opam-switch/build/lbvs_consent.2.2.0/src'
- c++ -W -Wall `pkg-config --silence-errors --cflags openbabel-2.0 || pkg-config --cflags openbabel-3` ob_maccs.cpp \
- -o lbvs_consent_ob_maccs `pkg-config --silence-errors --libs openbabel-2.0 || pkg-config --libs openbabel-3` -Wl,-R/usr/lib
- In file included from /usr/include/openbabel3/openbabel/fingerprint.h:28,
- from ob_maccs.cpp:1:
- /usr/include/openbabel3/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
- 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
- | ^~~~~~~~~~~~~~~
- In file included from /usr/include/c++/12/bits/stl_tree.h:65,
- from /usr/include/c++/12/map:60,
- from /usr/include/openbabel3/openbabel/fingerprint.h:23:
- /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
- 131 | struct binary_function
- | ^~~~~~~~~~~~~~~
- In file included from /usr/include/openbabel3/openbabel/mol.h:48,
- from ob_maccs.cpp:2:
- /usr/include/openbabel3/openbabel/base.h: In member function 'virtual const char* OpenBabel::OBBase::GetTitle(bool) const':
- /usr/include/openbabel3/openbabel/base.h:286:49: warning: unused parameter 'replaceNewlines' [-Wunused-parameter]
- 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";}
- | ^
- /usr/include/openbabel3/openbabel/base.h:37:20: note: in definition of macro 'UNUSED'
- 37 | # define UNUSED(x) x
- | ^
- make[1]: Leaving directory '/home/opam/.opam/default/.opam-switch/build/lbvs_consent.2.2.0/src'
[lbvs_consent: dune build]
+ /home/opam/.opam/default/bin/dune "build" "-p" "lbvs_consent" "-j" "39" (CWD=/home/opam/.opam/default/.opam-switch/build/lbvs_consent.2.2.0)
-> compiled lbvs_consent.2.2.0
[lbvs_consent: cp]
+ /usr/bin/cp "bin/lbvs_consent_ecfp4.py" "/home/opam/.opam/default/bin/lbvs_consent_ecfp4.py" (CWD=/home/opam/.opam/default/.opam-switch/build/lbvs_consent.2.2.0)
[lbvs_consent: cp]
+ /usr/bin/cp "src/lbvs_consent_ob_maccs" "/home/opam/.opam/default/bin/lbvs_consent_ob_maccs" (CWD=/home/opam/.opam/default/.opam-switch/build/lbvs_consent.2.2.0)
-> installed lbvs_consent.2.2.0
[WARNING] Opam packages conf-autoconf.0.2, conf-boost.1, conf-openbabel.0.1, conf-python-3.9.0.0, conf-rdkit.1 and conf-zlib.1 depend on the following system packages that are no longer installed: autoconf libboost-dev libopenbabel-dev librdkit-dev python3 python3-rdkit zlib1g-dev
- conf-autoconf.0.2: depends on autoconf
- conf-boost.1: depends on libboost-dev
- conf-openbabel.0.1: depends on libopenbabel-dev
- conf-python-3.9.0.0: depends on python3
- conf-rdkit.1: depends on librdkit-dev, python3-rdkit
- conf-zlib.1: depends on zlib1g-dev
=== STDERR ===
2026-06-16 17:08.27: OK: build lbvs_consent.2.2.0 (runc: 13.2s, disk: 13KB)
2026-06-16 17:08.27: Job succeeded