2026-06-16 10:53.30: New job: build conf-rdkit.1 (b48136280c89)
2026-06-16 10:53.30: Waiting for resource in pool day11-builds
2026-06-16 11:05.37: Got resource from pool day11-builds
2026-06-16 11:05.37: [profile full] build conf-rdkit.1
2026-06-16 11:05.37: build conf-rdkit.1 (b48136280c89)
=== DEPENDENCIES (0 transitive) ===

=== STDOUT ===
Processing: [default: loading data]

The following system packages will first need to be installed:
    librdkit-dev python3-rdkit

<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>

+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "librdkit-dev" "python3-rdkit"
- debconf: delaying package configuration, since apt-utils is not installed
- Selecting previously unselected package libpython3.11-minimal:amd64.
- (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 18247 files and directories currently installed.)
- Preparing to unpack .../libpython3.11-minimal_3.11.2-6+deb12u7_amd64.deb ...
- Unpacking libpython3.11-minimal:amd64 (3.11.2-6+deb12u7) ...
- Selecting previously unselected package python3.11-minimal.
- Preparing to unpack .../python3.11-minimal_3.11.2-6+deb12u7_amd64.deb ...
- Unpacking python3.11-minimal (3.11.2-6+deb12u7) ...
- Setting up libpython3.11-minimal:amd64 (3.11.2-6+deb12u7) ...
- Setting up python3.11-minimal (3.11.2-6+deb12u7) ...
- Selecting previously unselected package python3-minimal.
- (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 18554 files and directories currently installed.)
- Preparing to unpack .../python3-minimal_3.11.2-1+b1_amd64.deb ...
- Unpacking python3-minimal (3.11.2-1+b1) ...
- Selecting previously unselected package media-types.
- Preparing to unpack .../media-types_10.0.0_all.deb ...
- Unpacking media-types (10.0.0) ...
- Selecting previously unselected package libpython3.11-stdlib:amd64.
- Preparing to unpack .../libpython3.11-stdlib_3.11.2-6+deb12u7_amd64.deb ...
- Unpacking libpython3.11-stdlib:amd64 (3.11.2-6+deb12u7) ...
- Selecting previously unselected package python3.11.
- Preparing to unpack .../python3.11_3.11.2-6+deb12u7_amd64.deb ...
- Unpacking python3.11 (3.11.2-6+deb12u7) ...
- Selecting previously unselected package libpython3-stdlib:amd64.
- Preparing to unpack .../libpython3-stdlib_3.11.2-1+b1_amd64.deb ...
- Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ...
- Setting up python3-minimal (3.11.2-1+b1) ...
- Selecting previously unselected package python3.
- (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 18964 files and directories currently installed.)
- Preparing to unpack .../00-python3_3.11.2-1+b1_amd64.deb ...
- Unpacking python3 (3.11.2-1+b1) ...
- Selecting previously unselected package fonts-freefont-ttf.
- Preparing to unpack .../01-fonts-freefont-ttf_20120503-10_all.deb ...
- Unpacking fonts-freefont-ttf (20120503-10) ...
- Selecting previously unselected package libblas3:amd64.
- Preparing to unpack .../02-libblas3_3.11.0-2_amd64.deb ...
- Unpacking libblas3:amd64 (3.11.0-2) ...
- Selecting previously unselected package libboost-iostreams1.74.0:amd64.
- Preparing to unpack .../03-libboost-iostreams1.74.0_1.74.0+ds1-21_amd64.deb ...
- Unpacking libboost-iostreams1.74.0:amd64 (1.74.0+ds1-21) ...
- Selecting previously unselected package libboost-python1.74.0.
- Preparing to unpack .../04-libboost-python1.74.0_1.74.0+ds1-21_amd64.deb ...
- Unpacking libboost-python1.74.0 (1.74.0+ds1-21) ...
- Selecting previously unselected package libboost-serialization1.74.0:amd64.
- Preparing to unpack .../05-libboost-serialization1.74.0_1.74.0+ds1-21_amd64.deb ...
- Unpacking libboost-serialization1.74.0:amd64 (1.74.0+ds1-21) ...
- Selecting previously unselected package libpixman-1-0:amd64.
- Preparing to unpack .../06-libpixman-1-0_0.42.2-1_amd64.deb ...
- Unpacking libpixman-1-0:amd64 (0.42.2-1) ...
- Selecting previously unselected package libxcb-render0:amd64.
- Preparing to unpack .../07-libxcb-render0_1.15-1_amd64.deb ...
- Unpacking libxcb-render0:amd64 (1.15-1) ...
- Selecting previously unselected package libxcb-shm0:amd64.
- Preparing to unpack .../08-libxcb-shm0_1.15-1_amd64.deb ...
- Unpacking libxcb-shm0:amd64 (1.15-1) ...
- Selecting previously unselected package libxrender1:amd64.
- Preparing to unpack .../09-libxrender1_1%3a0.9.10-1.1_amd64.deb ...
- Unpacking libxrender1:amd64 (1:0.9.10-1.1) ...
- Selecting previously unselected package libcairo2:amd64.
- Preparing to unpack .../10-libcairo2_1.16.0-7_amd64.deb ...
- Unpacking libcairo2:amd64 (1.16.0-7) ...
- Selecting previously unselected package libcoordgen3:amd64.
- Preparing to unpack .../11-libcoordgen3_3.0.1-1_amd64.deb ...
- Unpacking libcoordgen3:amd64 (3.0.1-1) ...
- Selecting previously unselected package libgfortran5:amd64.
- Preparing to unpack .../12-libgfortran5_12.2.0-14+deb12u1_amd64.deb ...
- Unpacking libgfortran5:amd64 (12.2.0-14+deb12u1) ...
- Selecting previously unselected package liblapack3:amd64.
- Preparing to unpack .../13-liblapack3_3.11.0-2_amd64.deb ...
- Unpacking liblapack3:amd64 (3.11.0-2) ...
- Selecting previously unselected package libmaeparser1:amd64.
- Preparing to unpack .../14-libmaeparser1_1.3.0-1_amd64.deb ...
- Unpacking libmaeparser1:amd64 (1.3.0-1) ...
- Selecting previously unselected package libpython3.11:amd64.
- Preparing to unpack .../15-libpython3.11_3.11.2-6+deb12u7_amd64.deb ...
- Unpacking libpython3.11:amd64 (3.11.2-6+deb12u7) ...
- Selecting previously unselected package librdkit1.
- Preparing to unpack .../16-librdkit1_202209.3-1_amd64.deb ...
- Unpacking librdkit1 (202209.3-1) ...
- Selecting previously unselected package librdkit-dev.
- Preparing to unpack .../17-librdkit-dev_202209.3-1_amd64.deb ...
- Unpacking librdkit-dev (202209.3-1) ...
- Selecting previously unselected package python3-pkg-resources.
- Preparing to unpack .../18-python3-pkg-resources_66.1.1-1+deb12u2_all.deb ...
- Unpacking python3-pkg-resources (66.1.1-1+deb12u2) ...
- Selecting previously unselected package python3-numpy.
- Preparing to unpack .../19-python3-numpy_1%3a1.24.2-1+deb12u1_amd64.deb ...
- Unpacking python3-numpy (1:1.24.2-1+deb12u1) ...
- Selecting previously unselected package rdkit-data.
- Preparing to unpack .../20-rdkit-data_202209.3-1_all.deb ...
- Unpacking rdkit-data (202209.3-1) ...
- Selecting previously unselected package python3-rdkit.
- Preparing to unpack .../21-python3-rdkit_202209.3-1_amd64.deb ...
- Unpacking python3-rdkit (202209.3-1) ...
- Setting up media-types (10.0.0) ...
- Setting up libpixman-1-0:amd64 (0.42.2-1) ...
- Setting up libxrender1:amd64 (1:0.9.10-1.1) ...
- Setting up libxcb-render0:amd64 (1.15-1) ...
- Setting up libboost-iostreams1.74.0:amd64 (1.74.0+ds1-21) ...
- Setting up libpython3.11-stdlib:amd64 (3.11.2-6+deb12u7) ...
- Setting up fonts-freefont-ttf (20120503-10) ...
- Setting up libxcb-shm0:amd64 (1.15-1) ...
- Setting up rdkit-data (202209.3-1) ...
- Setting up libcairo2:amd64 (1.16.0-7) ...
- Setting up libmaeparser1:amd64 (1.3.0-1) ...
- Setting up libblas3:amd64 (3.11.0-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- Setting up libgfortran5:amd64 (12.2.0-14+deb12u1) ...
- Setting up libboost-serialization1.74.0:amd64 (1.74.0+ds1-21) ...
- Setting up libcoordgen3:amd64 (3.0.1-1) ...
- Setting up libboost-python1.74.0 (1.74.0+ds1-21) ...
- Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ...
- Setting up python3.11 (3.11.2-6+deb12u7) ...
- Setting up liblapack3:amd64 (3.11.0-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up libpython3.11:amd64 (3.11.2-6+deb12u7) ...
- Setting up librdkit1 (202209.3-1) ...
- Setting up python3 (3.11.2-1+b1) ...
- running python rtupdate hooks for python3.11...
- running python post-rtupdate hooks for python3.11...
- Setting up librdkit-dev (202209.3-1) ...
- Setting up python3-pkg-resources (66.1.1-1+deb12u2) ...
- Setting up python3-numpy (1:1.24.2-1+deb12u1) ...
- Setting up python3-rdkit (202209.3-1) ...
- Processing triggers for libc-bin (2.36-9+deb12u14) ...
[conf-rdkit.1/test.cpp: dl]
-> retrieved conf-rdkit.1  (https://opam.ocaml.org/cache)
[conf-rdkit: sh]
+ /usr/bin/sh "-c" "c++ test.cpp -o test -I/usr/include/rdkit -lRDKitRDGeneral -DSWIG || c++ test.cpp -o test -I/usr/include/rdkit -lRDGeneral -DSWIG" (CWD=/home/opam/.opam/default/.opam-switch/build/conf-rdkit.1)
[conf-rdkit: ./test]
+ /home/opam/.opam/default/.opam-switch/build/conf-rdkit.1/./test  (CWD=/home/opam/.opam/default/.opam-switch/build/conf-rdkit.1)
- 2022.09.3
-> compiled  conf-rdkit.1
-> installed conf-rdkit.1

=== STDERR ===

2026-06-16 11:08.57: OK: build conf-rdkit.1 (runc: 23.1s, disk: 0KB)
2026-06-16 11:08.57: Job succeeded